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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_265390_265549_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
265390 - 265549
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GGTCCCTGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
ACAGCATGCATC
Flanking Amino Acid:
FWYQLSTGDPGSLSILVEDS
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
58.5
0.19
1.1
53.8
41.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
38.7
-0.9
2
43.36
38

Associated Gene:

Gene:
MAMDC4
Ensembl Gene ID:
ENSAPLG00000016046
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016742
261618 - 274458
12841