Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_266163_266275_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

266163 - 266275

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGGTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

CCCCTCTGAAGC

Flanking Amino Acid:

LPATGQKRYRLAFEALRDGF

Intron Amino Acid Position:

965

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.4

38.7

Major BPS

69.8

0.49

37.5

Major PPT

60.8

0.24

1.1

55.8

38.9

Minor 5ss

26.1

-2.7

2.9

22.8

37.4

Minor BPS

45.1

-0.3

1.7

47.43

42.4

Associated Gene:

Gene:

MAMDC4

Ensembl Gene ID:

ENSAPLG00000016046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016742

261618 - 274458

12841