Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_267079_267497_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

267079 - 267497

Intron Length:

419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTGGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCCAC

U12 Branch Point Sequence:

CCACCCTCACCA

Flanking Amino Acid:

DPNVVPPGATELSCNFETGL

Intron Amino Acid Position:

837

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

70.6

41.3

Major BPS

59.6

0.24

1.2

70.4

35.8

Major PPT

70.1

0.45

1.1

64.9

41.2

Minor 5ss

39.7

-1.2

2.8

47.2

Minor BPS

46.9

-0.2

1.9

53.78

44.4

Associated Gene:

Gene:

MAMDC4

Ensembl Gene ID:

ENSAPLG00000016046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016742

261618 - 274458

12841