Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_268464_268613_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

268464 - 268613

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTTGGTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATGAT

U12 Branch Point Sequence:

GGTACCACAGCA

Flanking Amino Acid:

CTDGSDEKLCGATTFEEGDG

Intron Amino Acid Position:

676

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

70.5

41.3

Major BPS

64.5

0.36

1.1

55.4

40.3

Major PPT

82.4

0.73

0.9

76.3

37.7

Minor 5ss

32.5

-2

38.1

40.9

Minor BPS

43.6

-0.4

55.91

Associated Gene:

Gene:

MAMDC4

Ensembl Gene ID:

ENSAPLG00000016046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016742

261618 - 274458

12841