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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_268764_269277_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
268764 - 269277
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CTTTCACCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCACCATCA
Flanking Amino Acid:
ILSPGCTPHLDPSPTALPRQ
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.8
42.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
73.7
0.53
0.9
71.8
32.9
Minor 5ss
41.6
-0.9
3
47.2
48.2
Minor BPS
43.2
-0.5
2.2
61.78
43.9

Associated Gene:

Gene:
MAMDC4
Ensembl Gene ID:
ENSAPLG00000016046
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016742
261618 - 274458
12841