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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2694621_2694993_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2694621 - 2694993
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
HFLKQRAVATVTDTIPSAEK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
87.8
0.85
0.6
85.5
21.8
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TNFSF15
Ensembl Gene ID:
ENSAPLG00000015357
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039418
2688939 - 2701718
12780