Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_272992_273085_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

272992 - 273085

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGGGTGCC

5'SS Class:

major

3'SS Sequence:

CCCCTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CTGCCCTGACCT

Flanking Amino Acid:

CSDCSDENQCGYLGVSTVLG

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

63.5

36.3

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

69.2

0.43

0.8

60.1

35.4

Minor 5ss

27.3

-2.6

3.2

31.8

37.6

Minor BPS

52.1

0.15

1.8

70.2

46.3

Associated Gene:

Gene:

MAMDC4

Ensembl Gene ID:

ENSAPLG00000016046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016742

261618 - 274458

12841