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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_273200_273845_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
273200 - 273845
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTCTCTCTCACA
Flanking Amino Acid:
LVLLAALLLLDGAILSSRAT
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80.8
0.69
0.7
75.3
26.8
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
48.5
-0.1
2.1
63.12
43.7

Associated Gene:

Gene:
MAMDC4
Ensembl Gene ID:
ENSAPLG00000016046
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016742
261618 - 274458
12841