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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2781455_2781933_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2781455 - 2781933
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGATGTGTGACT
Flanking Amino Acid:
GRYGDNNHSQGVNWFHWKGH
Intron Amino Acid Position:
1954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
43.5
-0.4
2.3
60.88
43

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026