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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2783484_2784118_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2783484 - 2784118
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGTATT
Flanking Amino Acid:
FGDPNDEFWIGLENLHKITS
Intron Amino Acid Position:
1845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.7
0.58
0.9
69.3
36.9
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
49.5
0.04
2.1
75.09
41.1

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026