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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2787216_2788161_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2787216 - 2788161
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCAT
5'SS Class:
major
3'SS Sequence:
ATTTATCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTTACTG
Flanking Amino Acid:
IYESIDGKVKEVILDPETTS
Intron Amino Acid Position:
1718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
64.6
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.4
0.5
0.8
66.5
34.8
Minor 5ss
37.9
-1.4
3.4
55.3
48.9
Minor BPS
64
0.3
1.6
68.91
39.2

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026