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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2788293_2789134_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2788293 - 2789134

Intron Length:

842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTGTCT

5'SS Class:

major

3'SS Sequence:

CTGTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GTGATTGTAATT

Flanking Amino Acid:

SETLSTQFTTGMDAPRDLSA

Intron Amino Acid Position:

1674

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.1

62.2

38.7

Major BPS

84.4

0.85

1.1

34.5

Major PPT

80.4

0.68

0.8

77.5

31.3

Minor 5ss

32.9

-1.9

3.5

48.2

47.4

Minor BPS

47.4

-0.1

64.21

41.1

Associated Gene:

Gene:

TNC

Ensembl Gene ID:

ENSAPLG00000014515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015243

2780049 - 2882214

102166

ENSAPLT00000030445

2780606 - 2828631

48026

ENSAPLT00000035961

2780606 - 2828631

48026

ENSAPLT00000025380

2780915 - 2828631

47717

ENSAPLT00000033333

2780606 - 2828631

48026

ENSAPLT00000024496

2780021 - 2828631

48611

ENSAPLT00000031010

2780606 - 2828631

48026

ENSAPLT00000021254

2780606 - 2828631

48026

ENSAPLT00000030644

2780606 - 2828631

48026

ENSAPLT00000042565

2780606 - 2828631

48026