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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2789279_2789751_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2789279 - 2789751

Intron Length:

473

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTTTTTTCCT

Flanking Amino Acid:

NYVISYASEDEPEVTQMVSG

Intron Amino Acid Position:

1626

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.5

37.2

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

89.6

0.89

0.6

84.8

Minor 5ss

-1.9

2.9

37.4

41.9

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

TNC

Ensembl Gene ID:

ENSAPLG00000014515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024496

2780021 - 2828631

48611

ENSAPLT00000031010

2780606 - 2828631

48026

ENSAPLT00000042565

2780606 - 2828631

48026

ENSAPLT00000021254

2780606 - 2828631

48026

ENSAPLT00000030644

2780606 - 2828631

48026

ENSAPLT00000035961

2780606 - 2828631

48026

ENSAPLT00000015243

2780049 - 2882214

102166

ENSAPLT00000030445

2780606 - 2828631

48026

ENSAPLT00000025380

2780915 - 2828631

47717

ENSAPLT00000033333

2780606 - 2828631

48026