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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2789872_2791042_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2789872 - 2791042

Intron Length:

1171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATAT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

TTTGTCAAATCC

Flanking Amino Acid:

SEPISGILKTALDSPSGLVV

Intron Amino Acid Position:

1586

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

79.6

29.2

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

89.5

0.89

0.6

87.9

22.1

Minor 5ss

39.7

-1.2

3.1

56.3

47.9

Minor BPS

44.2

-0.4

2.2

62.28

43.5

Associated Gene:

Gene:

TNC

Ensembl Gene ID:

ENSAPLG00000014515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025380

2780915 - 2828631

47717

ENSAPLT00000033333

2780606 - 2828631

48026

ENSAPLT00000024496

2780021 - 2828631

48611

ENSAPLT00000031010

2780606 - 2828631

48026

ENSAPLT00000021254

2780606 - 2828631

48026

ENSAPLT00000030644

2780606 - 2828631

48026

ENSAPLT00000042565

2780606 - 2828631

48026

ENSAPLT00000015243

2780049 - 2882214

102166

ENSAPLT00000030445

2780606 - 2828631

48026

ENSAPLT00000035961

2780606 - 2828631

48026