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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2791187_2792307_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2791187 - 2792307
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGCAATTAATC
Flanking Amino Acid:
YRISYVPVTGGTPNVVTVDG
Intron Amino Acid Position:
1538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.6
0.4
0.9
59.4
41.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
48.4
-0.1
1.8
57.97
40.8

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026