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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2792431_2805985_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2792431 - 2805985
Intron Length:
13555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TCTCCACTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCTTCTCCACT
Flanking Amino Acid:
TQAISSAATTVVGSPKGISF
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
70.2
0.45
1
65.2
35.3
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
50.2
0.09
2
71.07
46.1

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042565
2780606 - 2828631
48026