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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2798154_2799659_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2798154 - 2799659
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATCAC
U12 Branch Point Sequence:
TTTTCCCCTACT
Flanking Amino Acid:
TKPLSTVAITEAEPEVDNLL
Intron Amino Acid Position:
1406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
58.2
0.2
1.1
61.4
34.4
Major PPT
85.2
0.79
0.6
84.3
23.5
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
56.4
0.28
2.2
85.93
39.7

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030644
2780606 - 2828631
48026