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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2802261_2804595_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2802261 - 2804595
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTCTCTTCACC
Flanking Amino Acid:
GQTLTALATTEAEPQLGTLT
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83
0.74
0.7
81.1
24
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
61.1
0.33
1.8
71.01
40.5

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024496
2780021 - 2828631
48611