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Intron Name: Anas_platyrhynchos_platyrhynchos_18_2806259_2808296_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2806259 - 2808296

Intron Length:

2038

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTCCCTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

CCCTTCTGACCA

Flanking Amino Acid:

TKPLSVETATGVHPEVGELT

Intron Amino Acid Position:

1133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

1.1

80.5

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

0.74

0.7

81.2

23.9

Minor 5ss

77.1

0.91

1.7

84.6

33.2

Minor BPS

47.9

-0.1

1.8

54.77

44.5

Associated Gene:

Gene:

TNC

Ensembl Gene ID:

ENSAPLG00000014515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025380

2780915 - 2828631

47717

ENSAPLT00000035961

2780606 - 2828631

48026

ENSAPLT00000021254

2780606 - 2828631

48026

ENSAPLT00000031010

2780606 - 2828631

48026

ENSAPLT00000015243

2780049 - 2882214

102166

ENSAPLT00000030644

2780606 - 2828631

48026

ENSAPLT00000030445

2780606 - 2828631

48026

ENSAPLT00000042565

2780606 - 2828631

48026