About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2808570_2811214_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2808570 - 2811214
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TGTCCTTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTGTCCTTATTC
Flanking Amino Acid:
SWSLEALAATEEEPELGKLS
Intron Amino Acid Position:
1305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.4
0.66
0.9
77.5
35.9
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
64.6
0.44
1.6
69.71
42.5

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026