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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2808570_2818468_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2808570 - 2818468
Intron Length:
9899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTGTCCTTATTC
Flanking Amino Acid:
SKPTTVKGSTEEEPELGKLS
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.4
0.66
0.9
77.5
35.9
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
64.6
0.44
1.6
69.71
42.5

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035961
2780606 - 2828631
48026
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000042565
2780606 - 2828631
48026