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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2811635_2818468_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2811635 - 2818468
Intron Length:
6834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GAAATTTTAACT
Flanking Amino Acid:
SKPTTVKGSTAHLVTSPGES
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.7
0.53
0.9
73
37
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
63.4
0.5
1.3
71.39
39.1

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000025380
2780915 - 2828631
47717