About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2824044_2825781_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2824044 - 2825781
Intron Length:
1738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TTCCCCTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TGAGCCTTGAAA
Flanking Amino Acid:
DGYMGIDCSDVSPPTELTVT
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
73
0.52
0.7
65.7
30.3
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
58.2
0.25
1.6
65.22
40.7

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026