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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2827096_2828038_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2827096 - 2828038
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTTTCCTGACTC
Flanking Amino Acid:
GCCPNSQTAEGRLDTTPYCS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.4
0.48
1
65
39.8
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
60.4
0.3
1.8
72.1
39.1

Associated Gene:

Gene:
TNC
Ensembl Gene ID:
ENSAPLG00000014515
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024496
2780021 - 2828631
48611
ENSAPLT00000031010
2780606 - 2828631
48026
ENSAPLT00000021254
2780606 - 2828631
48026
ENSAPLT00000030644
2780606 - 2828631
48026
ENSAPLT00000042565
2780606 - 2828631
48026
ENSAPLT00000015243
2780049 - 2882214
102166
ENSAPLT00000030445
2780606 - 2828631
48026
ENSAPLT00000035961
2780606 - 2828631
48026
ENSAPLT00000025380
2780915 - 2828631
47717
ENSAPLT00000033333
2780606 - 2828631
48026