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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2971992_2973230_F

Intron Information:

Intron Rank:
125055
Intron Class:
major
Intron Phase:
Intron Coordinates:
2971992 - 2973230
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTGTCTCATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.1
0.66
0.8
76.2
32.4
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
47.8
-0.3
1.9
58.64
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017347
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042714
2965934 - 2973492
7559