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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2979741_2992852_F

Intron Information:

Intron Rank:
141519
Intron Class:
major
Intron Phase:
Intron Coordinates:
2979741 - 2992852
Intron Length:
13112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGATTT
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
73.6
37.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
92.4
0.95
0.7
87.5
30
Minor 5ss
38.8
-1.3
3.4
56.5
47.8
Minor BPS
57.9
0.11
1.8
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026213
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041088
2979631 - 2998778
19148