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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_2992999_2998281_F

Intron Information:

Intron Rank:
141520
Intron Class:
major
Intron Phase:
Intron Coordinates:
2992999 - 2998281
Intron Length:
5283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.4
0.55
0.9
69
37
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
63.3
0.41
1.7
75.26
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026213
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041088
2979631 - 2998778
19148