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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_306087_313025_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
306087 - 313025
Intron Length:
6939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTACTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
CTATGTCTAATC
Flanking Amino Acid:
YRLNTVLIVKVMERHLGGTL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.6
0.67
0.9
72.9
37
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
47.2
-0.2
2
59.2
40.5

Associated Gene:

Gene:
RABL6
Ensembl Gene ID:
ENSAPLG00000015770
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044263
300033 - 364200
64168
ENSAPLT00000035708
300033 - 359586
59554
ENSAPLT00000022172
301033 - 364200
63168
ENSAPLT00000016481
301980 - 350891
48912