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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3285052_3291589_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3285052 - 3291589
Intron Length:
6538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCACA
5'SS Class:
major
3'SS Sequence:
CCTGGCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
TTTTCCTGGCCT
Flanking Amino Acid:
FPPIDGHFFEREVGSACDLC
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.6
36.5
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
63.7
0.31
0.9
53.9
36.6
Minor 5ss
34.3
-1.8
2.8
41.2
44.8
Minor BPS
48.5
-0
3.6
88.18
37

Associated Gene:

Gene:
PAPPA
Ensembl Gene ID:
ENSAPLG00000014198
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034510
3186393 - 3400860
214468
ENSAPLT00000028260
3223423 - 3401362
177940
ENSAPLT00000014795
3223614 - 3389872
166259