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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3314533_3316146_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3314533 - 3316146
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
GCCCTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTTTGCTCGTTT
Flanking Amino Acid:
SGYCGDGIIQTDLGEECDDM
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
69.1
0.43
0.9
61.2
35.1
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
39.5
-0.7
3.7
74.92
42.6

Associated Gene:

Gene:
PAPPA
Ensembl Gene ID:
ENSAPLG00000014198
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034510
3186393 - 3400860
214468
ENSAPLT00000028260
3223423 - 3401362
177940
ENSAPLT00000014795
3223614 - 3389872
166259