Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3316239_3328524_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3316239 - 3328524

Intron Length:

12286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CATTTTTTGATT

Flanking Amino Acid:

CLQELSFNCIDEPSRCYFHD

Intron Amino Acid Position:

943

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

73.1

43.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

80.2

0.68

0.9

77.3

31.4

Minor 5ss

38.3

-1.3

51.2

45.1

Minor BPS

65.1

0.56

1.2

74.42

37.1

Associated Gene:

Gene:

PAPPA

Ensembl Gene ID:

ENSAPLG00000014198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014795

3223614 - 3389872

166259

ENSAPLT00000034510

3186393 - 3400860

214468

ENSAPLT00000028260

3223423 - 3401362

177940