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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_332648_334205_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
332648 - 334205
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
MV*NWKMTPRRQSQKWLWMQ
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
87.2
0.84
0.8
80.6
36.8
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
RABL6
Ensembl Gene ID:
ENSAPLG00000015770
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035708
300033 - 359586
59554
ENSAPLT00000022172
301033 - 364200
63168
ENSAPLT00000016481
301980 - 350891
48912
ENSAPLT00000044263
300033 - 364200
64168