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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3328722_3348247_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3328722 - 3348247
Intron Length:
19526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTGTCTTGATA
Flanking Amino Acid:
VVIGQPAATQTCRTKVIDLN
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
86.7
0.82
0.6
85.4
21.9
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
63.3
0.41
1.4
68.91
38.3

Associated Gene:

Gene:
PAPPA
Ensembl Gene ID:
ENSAPLG00000014198
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034510
3186393 - 3400860
214468
ENSAPLT00000028260
3223423 - 3401362
177940
ENSAPLT00000014795
3223614 - 3389872
166259