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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_334259_340935_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
334259 - 340935
Intron Length:
6677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTTTACAATT
Flanking Amino Acid:
KLKYGM*LTKENAKNEEMV*
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
72.8
0.51
1.1
76.2
37.1
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
50.8
0.1
1.8
73.39
37.8

Associated Gene:

Gene:
RABL6
Ensembl Gene ID:
ENSAPLG00000015770
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044263
300033 - 364200
64168
ENSAPLT00000035708
300033 - 359586
59554
ENSAPLT00000022172
301033 - 364200
63168
ENSAPLT00000016481
301980 - 350891
48912