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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3362041_3368524_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3362041 - 3368524
Intron Length:
6484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCCT
5'SS Class:
major
3'SS Sequence:
TGTCTACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCTAC
U12 Branch Point Sequence:
TTGTGTCTACTT
Flanking Amino Acid:
QRDDDLSKSQMESSVTMTCT
Intron Amino Acid Position:
1220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
69.2
41.2
Major BPS
49.5
-0
1.4
50.2
44.9
Major PPT
79.7
0.67
0.9
70.3
40.3
Minor 5ss
39.3
-1.2
2.7
52
44.5
Minor BPS
44.9
-0.3
2.2
67.61
44.2

Associated Gene:

Gene:
PAPPA
Ensembl Gene ID:
ENSAPLG00000014198
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034510
3186393 - 3400860
214468
ENSAPLT00000028260
3223423 - 3401362
177940
ENSAPLT00000014795
3223614 - 3389872
166259