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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3385761_3389593_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3385761 - 3389593
Intron Length:
3833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTTTTTCACT
Flanking Amino Acid:
SLIHCVKGCEPFMGDNYCDS
Intron Amino Acid Position:
1519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.7
0.8
0.8
77.2
36.7
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
59.4
0.38
1.7
75.46
41.9

Associated Gene:

Gene:
PAPPA
Ensembl Gene ID:
ENSAPLG00000014198
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014795
3223614 - 3389872
166259
ENSAPLT00000034510
3186393 - 3400860
214468
ENSAPLT00000028260
3223423 - 3401362
177940