Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3590462_3590564_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3590462 - 3590564

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCAA

5'SS Class:

strong_major

3'SS Sequence:

GTCCTCACTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

TTGTCCTCACTC

Flanking Amino Acid:

TGEQAPEKILRSTYSLGQGL

Intron Amino Acid Position:

470

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

70.2

37.7

Major BPS

72.4

0.56

73.5

32.5

Major PPT

72.6

0.51

0.9

62.8

38.4

Minor 5ss

26.7

-2.7

2.9

31.1

Minor BPS

57.8

0.22

1.9

70.3

41.7

Associated Gene:

Gene:

ASTN2

Ensembl Gene ID:

ENSAPLG00000012315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005071

3413581 - 3696108

282528

ENSAPLT00000005070

3413581 - 3696108

282528

ENSAPLT00000012819

3414895 - 3674609

259715