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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3590876_3600514_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3590876 - 3600514
Intron Length:
9639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTTGTCTCACCT
Flanking Amino Acid:
ACEQLCDQETGECSCHEGYA
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
79.3
0.66
0.8
77.3
31.4
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.8
0.06
1.9
72.31
44.6

Associated Gene:

Gene:
ASTN2
Ensembl Gene ID:
ENSAPLG00000012315
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012819
3414895 - 3674609
259715
ENSAPLT00000005071
3413581 - 3696108
282528
ENSAPLT00000005070
3413581 - 3696108
282528