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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3600683_3612632_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3600683 - 3612632
Intron Length:
11950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
LHVPEHFIADGSSFVVSEGS
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
65.2
39
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.9
0.61
0.7
75.2
28.8
Minor 5ss
33.4
-1.9
3.1
41.2
38.9
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
ASTN2
Ensembl Gene ID:
ENSAPLG00000012315
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005071
3413581 - 3696108
282528
ENSAPLT00000005070
3413581 - 3696108
282528
ENSAPLT00000012819
3414895 - 3674609
259715