Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3811079_3811356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3811079 - 3811356

Intron Length:

278

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTAGG

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATGAT

U12 Branch Point Sequence:

ATGTCTCTACTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.8

43.8

Major BPS

69.5

0.48

1.2

59.7

46.7

Major PPT

89.1

0.88

0.7

84.5

29.6

Minor 5ss

28.3

-2.5

2.8

32.9

42.1

Minor BPS

49.6

0.05

1.9

70.45

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013284

3810755 - 3819936

9182