Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3817430_3817755_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3817430 - 3817755

Intron Length:

326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TGTGCCATGAGG

Flanking Amino Acid:

REVLLKTRNKTKVGFWHQPP

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.6

33.8

Major BPS

84.8

0.86

85.7

34.9

Major PPT

89.1

0.88

0.6

84.6

23.2

Minor 5ss

29.7

-2.3

40.4

45.3

Minor BPS

46.6

-0.4

2.1

56.31

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023589

3803535 - 3819936

16402

ENSAPLT00000013284

3810755 - 3819936

9182