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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3823920_3825806_F

Intron Information:

Intron Rank:
145968
Intron Class:
major
Intron Phase:
Intron Coordinates:
3823920 - 3825806
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CATTGCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TGATCTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
68.5
0.42
1
62.5
38.3
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
63.2
0.49
2
81.48
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028658
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031940
3822937 - 3826761
3825