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Intron Name: Anas_platyrhynchos_platyrhynchos_18_3828946_3829376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3828946 - 3829376

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGTGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

ACCAGTTTCACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.8

83.1

28.7

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

86.2

0.81

0.8

81.5

30.6

Minor 5ss

39.3

-1.2

3.3

57.3

47.4

Minor BPS

44.1

-0.3

2.1

57.96

45.5

Associated Gene:

Gene:

TLR4

Ensembl Gene ID:

ENSAPLG00000012625

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013139

3828643 - 3835399

6757