Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3829609_3830443_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3829609 - 3830443

Intron Length:

835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GCCACTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TGAGTGTTGACT

Flanking Amino Acid:

AGCLLSPCLEVIPSKAFRCM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.6

32.3

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

0.41

59.7

40.5

Minor 5ss

33.3

-1.9

3.5

48.8

47.4

Minor BPS

48.1

-0

2.2

67.76

43.3

Associated Gene:

Gene:

TLR4

Ensembl Gene ID:

ENSAPLG00000012625

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013139

3828643 - 3835399

6757