About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3830611_3831942_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3830611 - 3831942
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
TCTTGCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTTGCCCAACA
Flanking Amino Acid:
VPELQLLDLSRCHIHTIEDN
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.1
0.5
0.9
66.5
34.4
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
48.4
-0.1
2.3
68.3
43.9

Associated Gene:

Gene:
TLR4
Ensembl Gene ID:
ENSAPLG00000012625
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013139
3828643 - 3835399
6757