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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3880867_3886547_R

Intron Information:

Intron Rank:
135362
Intron Class:
major
Intron Phase:
Intron Coordinates:
3880867 - 3886547
Intron Length:
5681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGTGT
5'SS Class:
major
3'SS Sequence:
TTCTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GCTTTCCCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
59.5
41.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
32
-2.1
3.5
47.5
47.9
Minor BPS
42.3
-0.6
1.9
51.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020241
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019096
3880497 - 3895109
14613