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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_3886677_3894907_R

Intron Information:

Intron Rank:
135363
Intron Class:
major
Intron Phase:
Intron Coordinates:
3886677 - 3894907
Intron Length:
8231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACGTCTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
76.1
37.8
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
48.5
-0.2
2.1
52.6
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020241
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019096
3880497 - 3895109
14613