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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4219197_4239599_R

Intron Information:

Intron Rank:
133875
Intron Class:
major
Intron Phase:
Intron Coordinates:
4219197 - 4239599
Intron Length:
20403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
ATGGAATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
69.2
0.43
1
61.8
39.9
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
48.1
-0
1.9
67.54
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019284
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033553
4216350 - 4240311
23962