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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4394628_4395113_F

Intron Information:

Intron Rank:
139855
Intron Class:
major
Intron Phase:
Intron Coordinates:
4394628 - 4395113
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.5
0.75
0.9
77.3
36.6
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025185
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039958
4391679 - 4396074
4396
ENSAPLT00000018112
4391679 - 4396591
4913