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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_4435629_4448760_F

Intron Information:

Intron Rank:
132719
Intron Class:
major
Intron Phase:
Intron Coordinates:
4435629 - 4448760
Intron Length:
13132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
CCTTGCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
62.4
0.31
1
64
32.1
Major PPT
80.7
0.69
0.9
78.4
34.8
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
52.1
0.14
2.1
70.75
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021338
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043338
4396823 - 4452133
55311